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Table 2 Apparent and optimism-corrected MSE values based on the four approaches (“Appr 1”, “Appr 2”, “Appr 3” and “Appr 4”) of handling multiply imputed data sets, and the shrinkage factor ( β ̄ L P )

From: Validation of prediction models based on lasso regression with multiply imputed data

MSE0= 2.4183

 

Averaged best model 0.9047

 

Averaged 3% tolerance 0.9672

Apparent MSE X

Appr 1

Appr 2

Appr 3

Appr 4

Appr 1

Appr 2

Appr 3

App 4

Optimism

-0.1162

-0.0127

-0.0988

-0.1452

-0.0656

-0.0081

-0.0537

-0.0781

Optimism corrected MSE X

1.0209

0.9174

1.0035

1.0499

1.0328

0.9753

1.0209

1.0453

β ̄ L P

1.0443

1.0552

1.0361

1.0498

1.1368

1.1257

1.1136

1.1297