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Table 3 Simulation example 3: effect of multicollinearity among mandatory covariates

From: Ridle for sparse regression with mandatory covariates with application to the genetic assessment of histologic grades of breast cancer

 

Method

rpe

g-measure

Sensitivity (\(\mathcal {M}\))

Sensitivity (\(\mathcal {O}\))

Specificity (\(\mathcal {O}\))

ρ=0.75

Ridge

6.353 (0.022)

    
 

Lasso

4.649 (0.167)

0.802 (0.011)

0.800 (0.000)

0.700 (0.048)

0.908 (0.004)

 

Elastic net

4.410 (0.128)

0.804 (0.005)

1.000 (0.009)

0.700 (0.006)

0.858 (0.006)

 

\(\mathcal {M}\)-unpenalized lasso

4.776 (0.260)

0.829 (0.005)

1.000 (0.000)

0.700 (0.031)

0.902 (0.007)

 

\(\mathcal {M}\)-unpenalized elastic net

5.402 (0.190)

0.823 (0.006)

1.000 (0.000)

0.700 (0.013)

0.871 (0.009)

 

Ridle

2.699 (0.152)

0.893 (0.007)

1.000 (0.000)

0.900 (0.048)

0.904 (0.004)

ρ=0.9

Ridge

6.270 (0.026)

    
 

Lasso

4.914 (0.148)

0.784 (0.010)

0.600 (0.089)

0.700 (0.036)

0.908 (0.004)

 

Elastic net

4.336 (0.135)

0.816 (0.005)

0.800 (0.092)

0.700 (0.018)

0.867 (0.008)

 

\(\mathcal {M}\)-unpenalized lasso

6.992 (0.337)

0.828 (0.008)

1.000 (0.000)

0.700 (0.031)

0.902 (0.006)

 

\(\mathcal {M}\)-unpenalized elastic net

7.245 (0.237)

0.827 (0.005)

1.000 (0.000)

0.700 (0.045)

0.860 (0.011)

 

Ridle

3.000 (0.214)

0.890 (0.006)

1.000 (0.000)

0.800 (0.045)

0.900 (0.004)

ρ=0.99

Ridge

6.231 (0.031)

    
 

Lasso

7.322 (0.200)

0.745 (0.005)

0.400 (0.000)

0.700 (0.000)

0.913 (0.003)

 

Elastic net

5.003 (0.155)

0.804 (0.006)

0.800 (0.049)

0.700 (0.019)

0.883 (0.006)

 

\(\mathcal {M}\)-unpenalized lasso

36.214 (2.064)

0.824 (0.006)

1.000 (0.000)

0.700 (0.046)

0.904 (0.005)

 

\(\mathcal {M}\)-unpenalized elastic net

33.583 (2.197)

0.830 (0.004)

1.000 (0.010)

0.700 (0.045)

0.867 (0.010)

 

Ridle

4.193 (0.343)

0.890 (0.005)

1.000 (0.000)

0.800 (0.029)

0.904 (0.004)

  1. The \(\mathcal {M}\)-unpenalized lasso and \(\mathcal {M}\)-unpenalized elastic net were performed without penalization on the mandatory covariates. g-measure is estimated from all predictors. Sensitivity (\(\mathcal {M}\)) is computed in terms of the mandatory variables only, whereas sensitivity (\(\mathcal {O}\)) and specificity (\(\mathcal {O}\)) are computed in terms of the optional variables only
  2. n=50, p=250, \(|\mathcal {M}|=5\). The smallest rpe and largest two g-measures are boldfaced