PCR (SOP) | Assay - chemistry | Target Organism | Gene encoding proteins | References |
---|---|---|---|---|
NOR1 | SINGLE-5'exonuclease | Norovirus genogroup 1 | RNA dependent RNA polyermerase/capsid | [34] |
NOR2 | DUPLEX-5'exonuclease | Norovirus genogroup 2 Mengo virus mutant vaccine strain MC | RNA dependent RNA polyermerase/capsid Not known | [35] Comite Europeen de Normalisation (CEN) |
ROTA | SINGLE-5'exonuclease | Rotavirus Group A | Viral Protein 6 | |
SAPO | DUPLEX-5'exonuclease | Sapovirus | Polymerase-capsid junction (2 probes) | [37] |
ASTR | SINGLE-SYBR Green | Astrovirus | Capsid | [38] |
ADEN | SINGLE-5'exonuclease | Adenovirus type 40 and 41 | Long fibre protein | [39] |
CAMP | DUPLEX-5'exonuclease | C. jejuni C. coli | Membrane associated protein Lipoprotein of iron binding protein | [40] |
SALM | DUPLEX-5'exonuclease | Salmonella enterica Green Fluorescent Protein gene (gfp) inserted into a E. coli | Glycotransferase GFP Protein | [41] |
EAGG | SINGLE-5'exonuclease | EnteroAggregative E. coli | Anti aggregation transporter | |
LIST | SINGLE-5'exonuclease | Listeria monocytogenes | Haemolysin A | [43] |
VT1-VT2 | DUPLEX-5'exonuclease | Verocytotoxin 1 Verocytotoxin 2 | Verocytotoxin 1 Verocytotoxin 2 | [44] |
GIAR | SINGLE-5'exonuclease | Giardia spp. | Elongation Factor 1 alpha | [43] |
CRYP | DUPLEX-5'exonuclease | C. hominis, C. parvum, C. meleagridis, C. felis | Cryptosporidium oocyst wall protein | [43] |
CPER | DUPLEX-5'exonuclease | C. perfringens alphatoxin and enterotoxin | Phospholipase C gene of C. perfringens Enterotoxin gene of enterotoxigenic C. perfringens | [45] |
CDIF | MULTIPLEX- 5'exonuclease | Toxin-producing C. difficile | Toxin B gene (tcdB), binary toxin (cdt), and tcdC gene single-base deletion at nucleotide 117 (tcdB) |