Network or regression-based methods for disease discrimination: a comparison study

Table 2 SNP information and associations with Leprosy for 16 previously identified SNPs within the Seven Susceptibility Genes

SNP	CHR	Position	Minor allele	Major allele	Gene	MAF	P value	OR
rs602875	6	32681607	G	A	HLA-DR-DQ	0.25	3.94E-11	0.54
rs42490	8	90847650	A	G	RIPK2	0.37	5.87E-05	0.71
rs40457	8	90892832	G	A	RIPK2	0.24	7.07E-04	0.72
rs10982385	9	116532838	G	T	TNFSF15	0.47	2.44E-03	1.28
rs4574921	9	116578155	C	T	TNFSF15	0.37	1.74E-04	1.39
rs10114470	9	116587593	C	T	TNFSF15	0.47	4.67E-06	0.68
rs6478108	9	116598524	T	C	TNFSF15	0.48	4.98E-07	0.66
rs1873613	12	38838684	C	T	LRRK2	0.22	3.15E-03	0.75
rs9533634	13	43295815	C	T	CCDC122	0.21	3.97E-04	0.70
rs3088362	13	43331630	A	C	CCDC122	0.32	2.11E-09	1.75
rs3764147	13	43355925	G	A	C13orf31	0.38	2.02E-10	1.74
rs10507522	13	43377000	G	A	C13orf31	0.25	1.97E-08	0.59
rs9302752	16	49276604	C	T	NOD2	0.38	3.09E-12	1.85
rs7194886	16	49282694	T	C	NOD2	0.19	3.43E-07	1.74
rs8057341	16	49295481	G	A	NOD2	0.25	2.13E-03	1.35
rs3135499	16	49323628	C	A	NOD2	0.24	1.81E-03	1.36

ISSN: 1471-2288