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Heterogeneity estimation in metaanalysis of standardized mean differences when the distribution of random effects departs from normal: A Monte Carlo simulation study
BMC Medical Research Methodology volume 23, Article number: 19 (2023)
Abstract
Background
Advantages of metaanalysis depend on the assumptions underlying the statistical procedures used being met. One of the main assumptions that is usually taken for granted is the normality underlying the population of true effects in a randomeffects model, even though the available evidence suggests that this assumption is often not met. This paper examines how 21 frequentist and 24 Bayesian methods, including several novel procedures, for computing a point estimate of the heterogeneity parameter (\({\tau }^{2}\)) perform when the distribution of random effects departs from normality compared to normal scenarios in metaanalysis of standardized mean differences.
Methods
A Monte Carlo simulation was carried out using the R software, generating data for metaanalyses using the standardized mean difference. The simulation factors were the number and average sample size of primary studies, the amount of heterogeneity, as well as the shape of the randomeffects distribution. The point estimators were compared in terms of absolute bias and variance, although results regarding mean squared error were also discussed.
Results
Although not all the estimators were affected to the same extent, there was a general tendency to obtain lower and more variable \({\tau }^{2}\) estimates as the randomeffects distribution departed from normality. However, the estimators ranking in terms of their absolute bias and variance did not change: Those estimators that obtained lower bias also showed greater variance. Finally, a large number and sample size of primary studies acted as a biasprotective factor against a lack of normality for several procedures, whereas only a high number of studies was a varianceprotective factor for most of the estimators analyzed.
Conclusions
Although the estimation and inference of the combined effect have proven to be sufficiently robust, our work highlights the role that the deviation from normality may be playing in the metaanalytic conclusions from the simulation results and the numerical examples included in this work. With the aim to exercise caution in the interpretation of the results obtained from randomeffects models, the tau2() R function is made available for obtaining the range of \({\tau }^{2}\) values computed from the 45 estimators analyzed in this work, as well as to assess how the pooled effect, its confidence and prediction intervals vary according to the estimator chosen.
Background
Metaanalysis is the set of procedures aimed at synthesizing the combined evidence from multiple scientific studies that attempt to answer a common research question. Combining the evidence, rather than relying on individual studies, has important benefits like an increase in the statistical power to detect an effect of interest or the possibility to examine why and how individual estimates vary. However, these benefits only apply when the assumptions underlying the statistical procedures used in metaanalysis are met or, at least, when these procedures are robust enough to the violation of these assumptions. One of the main assumptions that is usually taken for granted in applied metaanalysis is the normality underlying the population of true effect sizes in a randomeffects model. Previous works have tried to answer how the estimation and inference regarding the pooled effect size perform under nonnormal random effects [1,2,3], but less has been said about other important parameters, like the heterogeneity or betweenstudy variance.
This paper presents a Monte Carlo simulation that examines how the available methods for computing a point estimate of the betweenstudy variance perform when the distribution of effect sizes departs from normality in metaanalyses of standardized mean differences.
The role of the heterogeneity parameter
The randomeffects model assumes that the effect estimates collected in the metaanalysis may not only vary due to random sampling error (given the primary studies employ samples of different size), but also because each study is estimating a different parametric effect. Continuing with its mathematical formulation, the effect size estimate \({\widehat{\theta }}_{i}\) of the \({i}^{th}\) study (\(i=1,\dots ,k\)) is decomposed into \({\theta }_{i}+{e}_{i}\), where \({\theta }_{i}\) refers to the parametric effect estimated, and \({e}_{i}\) represents the error or difference between \({\theta }_{i}\) and \({\widehat{\theta }}_{i}\). The expected value of the \({e}_{i}\) errors is assumed to be zero (the effect size estimators are usually unbiased) and their variance is called error variance (i.e., withinstudy variance, \({\sigma }_{i}^{2}\)). The withinstudy variability is a way of quantifying the imprecision (variability due to random sampling error) of a study through a function of the study’s sample size. At the same time, the parametric effect \({\theta }_{i}\) is decomposed into \({\mu }_{\theta }+{u}_{i}\), where \({\mu }_{\theta }\) refers to the mean of the parametric effect distribution, and \({u}_{i}\) represents the difference between \({\theta }_{i}\) and \({\mu }_{\theta }\). Again, the expected value of the \({u}_{i}\) errors is assumed to be zero and their variance is called heterogeneity (i.e., betweenstudy variance, \({\tau }^{2}\)). Therefore, the betweenstudy variance is the variability found among effect estimates that is not due to random sampling error, but to the variability present in the parametric effect (hereinafter also referred to as randomeffects or true effects) distribution.
As Higgins et al. [4] (p139) stated, ‘The naive presentation of inference only on the mean of the randomeffects distribution is highly misleading. Estimation of [heterogeneity] is just as important’. It could be argued that the heterogeneity is equally important as the pooled effect size, given it is needed for understanding the consistency (i.e., the homogeneity or similarity) among the effects sizes and, also, for comparing the different sources of variability underlying the distribution of effect estimates. The correct estimation of the heterogeneity parameter is decisive, not only because the pooled effect, its confidence and prediction intervals, and indices such as \({I}^{2}\) depend on it, but also because it allows us to know whether additional analyses (i.e., metaregression, locationscale, or network metaanalyses) are needed to investigate the sources of this heterogeneity [5,6,7].
The normality assumption in the randomeffects model and the point estimation of \({{\varvec{\tau}}}^{2}\)
As explained above, the randomeffects model implies that the parameters that describe the distribution of the effect estimates are \({\mu }_{\theta }\), \({\tau }^{2}\) and \({\sigma }_{i}^{2}\), but no distributional assumption has been made to this point, neither for \({\widehat{\theta }}_{i}\) nor for \({\theta }_{i}\). The first normality assumptions are made at the withinstudy level, when assuming \({\widehat{\theta }}_{i}\sim N({\theta }_{i},{\sigma }_{i}^{2})\), which is often done when the primary studies have a sufficiently large sample size or when \({e}_{i}\) are supposed to be normally distributed with mean equal to 0 and variance \({\sigma }_{i}^{2}\) [8]. Since our work is focused on the normality assumption at the randomeffects distribution or betweenstudy level and not at the fixedeffect or withinstudy level, we refer the reader to the work of Jackson and White [8] for a comprehensive analysis of the statistical reasons why researchers often assume normality at the withinstudy level and the extent to which these assumptions may affect the metaanalytic results. At the betweenstudy level, the normality assumption regarding the modelling of the random effects is made depending on the heterogeneity estimator chosen. As we will see below, there are lots of ways for estimating the betweenstudy variance [9], and some of these estimators assume that the errors \({e}_{i}\) and \({u}_{i}\) are normally distributed and, consequently, that \({\widehat{\theta }}_{i}\) and \({\theta }_{i}\) are also normally distributed, \({\widehat{\theta }}_{i}\sim N({\theta }_{i},{\sigma }_{i}^{2})\) and \({\theta }_{i}\sim N({\mu }_{\theta },{\tau }^{2})\).
Since the generalization of randomeffects models to the field of metaanalysis, new and old procedures have been used to estimate \({\tau }^{2}\). The procedures discussed in this paper are presented in Table 1, along with their abbreviation, the authors who initially developed them and the year of publication [10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,25,26,27,28,29]. As can be seen in Table 1, these procedures differ according to whether they are obtained iteratively or analytically, whether they produce only positive estimates or also include zero, whether they rely on randomeffects normality, and the estimation method they are based on. Since describing each procedure in detail is beyond the scope of this paper, readers are referred to the supplementary material of the study of Boedeker & Henson [30] and the work of Zhang et al., [31] where most of the estimators evaluated in the present work are described. With respect to the most novel procedures (i.e., MPM and GENQM), the logic behind its calculation is presented in the work of Viechtbauer (2021) [19]. It is also worth mentioning that the tables and figures of the present work are available in the supplementary material hosted in the Open Science Framework repository [32].
Frequentist heterogeneity estimators
Beginning with the frequentist estimators based on the method of moments, Kacker [34] showed that several methods for estimating the betweenstudy variance were special cases of the application of the method of moments for a generalized version of the \(Q\) statistic proposed by Cochran [10]:
where \({\widehat{\theta }}_{i}\) and \({a}_{i}\) represents the effect estimate and the weighting factor (any positive constant), respectively, for the \({i}^{th}\) study, and \({\widehat{\theta }}_{w}\) is computed as the weighted mean of the effect size estimates, \({\sum }_{i=1}^{k}{a}_{i}{\widehat{\theta }}_{i} /{\sum }_{i=1}^{k}{a}_{i}\).
Those estimators based on the generalized \(Q\) statistic (CA, MP, DL, HM) are consequently obtained by setting different weights to \({a}_{i}\), and clearing the betweenstudy variance component from the expected value of the resulting \(Q\) statistic. Several other estimators (CA2, DL2, DLp, DLm) are extensions of the original procedures mentioned above, in the sense that they are computed based on one or multiple previous estimates of the Cochran [10] and the DerSimonianLaird [13] procedures.
The MP estimator introduced by Mandel and Paule [11, 12] is mathematically identical to the empirical Bayes estimator (EB), which was independently proposed by Morris [35]. For this reason, in the following we will refer to both procedures when naming the MP estimator.
Lin et al. [17] proposed the \(r\) and \(m\) estimators that rely on alternative \(Q\) statistics with the aim of obtaining \({\tau }^{2}\) estimates more robust to the presence of outliers. The difference between these alternative \(Q\) statistics and the one presented in Eq. 1 is that the formers are weighted sums of absolute differences instead of squared residuals, and that their residuals are computed with respect to a measure less affected by outliers than the typical weighted mean.
More recently, two new estimators have been proposed (MPM and GENQM) [19] with the aim of drawing attention to the fact that the previous methods estimate \({\tau }^{2}\) from the expected value of the generalized \(Q\) statistic, when in fact this statistic follows a \({\chi }^{2}\) distribution and therefore its distribution is skewed. For this reason, Viechtbauer[19] proposed to estimate \({\tau }^{2}\) from the median of the generalized \(Q\) statistic instead of its expected value.
Overall, the generalized \(Q\) statistic is simply a weighted sum of residuals and, therefore, does not imply any assumption of normality, regardless of the value of \({a}_{i}\). It is worth noting that, only when \(Q\) is used as a test statistic for which a \({\chi }^{2}\) distribution is assumed, then normality is assumed at the withinstudy level since, theoretically, a \({\chi }^{2}\) variable is the sum of several independent standard normal squared variables. As a result, all the heterogeneity estimators based on \(Q\)statistics, although based on potentially unrealistic assumptions (i.e., known withinstudy variances and unbiased effect size estimates) [8], do not involve assuming normality for the random effects.
The estimators based on maximum likelihood (ML and REML) rely on the withinstudy and betweenstudy normality assumptions [21]. These estimators assumed that each individual effect estimate is normally distributed with respect to a single parametric effect, and, at the same time, each parametric effect is supposed to be normally distributed regarding the mean of the parametric effects. Consequently, \({\tau }^{2}\) estimates based on these procedures are computed by maximizing the loglikelihood function where the individual effect estimates are assumed to follow a normal distribution with mean \({\mu }_{\theta }\) and variance \({\tau }^{2}+{\sigma }_{i}^{2}\).
Those heterogeneity estimators based on weighted least squares (SJ and SJ(CA)) also rely on the withinstudy and betweenstudy normality assumptions [22, 23]. These estimators were developed in the framework of a linear regression model: \(Y={\beta }_{0}1+\varepsilon\), where \(Y\) is a vector with the effect size estimates, \({\beta }_{0}\) is a constant that represents \({\mu }_{\theta }\), and \(\varepsilon\) is the error due to the total variance. Given that one of the underlying assumptions of linear regression models is that errors must be normally distributed, \(\varepsilon\) is therefore assumed to follow a \(N(0,{\tau }^{2}+{\sigma }^{2}\)) distribution and, consequently, the true effects and their estimates are also supposed to be normally distributed.
As for the nonparametric estimators (DLb and MBH), none of them are based on underlying normality assumptions, neither at the withinstudy nor at the betweenstudy level [16, 24]. The DLb estimator consists of bootstrapping the set of effect estimates to compute the DL estimator in each sample and, finally, calculating the mean DL estimate. Given that the DL estimator is based on the \(Q\) statistic and the bootstrap procedure does not imply any distributional assumption regarding the random effects, the DLb estimator is free of the normality assumption at the within and betweenstudy levels. Similar to the CA estimator, the logic underlying the MBH procedure is the difference between the total variance of the effect estimates and the variance due to random sampling error but cannot be expressed in terms of the generalized \(Q\) statistic as well as the HS estimator. As a simple difference between two sources of variability, the MBH estimator does not imply any within nor betweenstudy distributional assumptions. Although it is worth mentioning that it acknowledges the variability due to the fact that withinstudy variances are unknown [36] and was designed to be used only with the standardized mean difference.
The socalled artifact correction estimators (HSiv, HSss, and HSk) compute \({\tau }^{2}\) as the difference between the total variance of the effect estimates and the variance due to random sampling error, obtained as a weighted average of the withinstudy variances. Although Hunter and Schmidt [25] followed the same logic for developing the HS estimators that Cochran [10] did when proposing the CA estimator, the latter can be reduced to the generalized \(Q\) statistic when the weights \({a}_{i}\) are set to \(1/k\) whereas the HS versions cannot. The HS estimators can be seen as a difference between variances, but no distributional assumption is made regarding the effect sizes or their estimates.
Bayesian heterogeneity estimators
We now describe the underlying assumptions of Bayesian estimators. Three of them (RB, RBp, and BM) are derived analytically, whereas the Fully Bayesian estimators (FB) require Markov chain Monte Carlo (MCMC) processes.
As we will see below, the FB estimators [26] need to make distributional prior assumptions regarding the parameters to be estimated (in this case, \({\mu }_{\theta }\) and \({\tau }^{2}\)) and the underlying variables whose distribution depends on these parameters (that is, \({\theta }_{i}\) and \({\widehat{\theta }}_{i}\)). It is important to note that any distributional assumption can be made regarding the true effects and their estimates. However, given that some of the previously described frequentist estimators assume normality both at the within and betweenstudy levels, in the present study fully Bayesian estimators were also based on these assumptions.
As stated by Rukhin [27], the specification of the priors mean allows for the very explicit form of the approximate Bayesian estimators (RB and RBp), which makes them more flexible in terms of normality assumptions. The reason behind is that the only features of the normal distribution that are used to derive these estimators are the formula for the kurtosis of a normal variable, and the assumption that the withinstudy variances are independent of \({\widehat{\theta }}_{i}\) and follow a \({\chi }^{2}\) distribution.
Finally, the BM estimator proposed by Chung et al. [28, 29] also relies on the within and betweenstudy normality assumptions. This method can also be considered a penalized maximum likelihood estimator, since the \({\tau }^{2}\) estimate obtained is the resulting value that maximizes the loglikelihood function (where the individual estimates are assumed to be normally distributed) but penalized by the parameters of the gamma and uniform priors set up for \({\tau }^{2}\) and \({\mu }_{\theta }\), respectively.
Evidence of the lack of normality in metaanalysis
Although there are several reasons to doubt about the fulfilment of the withinstudy normality assumption [8, 37], this paper focuses on the effects of nonnormality at the betweenstudy level (i.e. when the distribution of random effects deviates from normality).
Contrary to the opinion of many metaanalysts, normality for the random effects cannot be justified using the central limit theorem even when the number of studies is large [4, 38]. Indeed, RubioAparicio et al. [39] reviewed 54 metaanalyses regarding the effectiveness of psychological treatments, that used effect sizes from the family of mean differences, and found that the distribution of effect estimates deviated from a normal distribution in a significant proportion of the metaanalyses analyzed. More specifically, in that review the skewness distribution of the 54 meta‐analyses presented a median value of 0.52, with 25^{th} and 75^{th} percentiles of 0.18 and 1.1 and minimum and maximum values of − 2 and 3.67, respectively. When pairing the skewness and kurtosis values for the effect estimates distribution of each study, these authors found a Ushaped relationship between skewness and kurtosis.
As a case study, we now analyze two of the metaanalyses reviewed by RubioAparicio et al. [39] The metaanalyses conducted by Richards and Richardson [40] and Shadish and Baldwin [41] had a similar number of independent estimates: 33 and 30, respectively. However, while the former showed a relatively normal distribution of effect estimates (skewness = 0.01, kurtosis = 0.88, pvalue for the ShapiroWilks test equaled 0.855), the latter summarized estimates whose distribution was far from normal (skewness = 2.09, kurtosis = 3.64, pvalue for the ShapiroWilks test equaled \(1.233\bullet {10}^{6}\)).
When the frequentist and Bayesian heterogeneity estimators described previously are computed, a similar mean estimate of \({\tau }^{2}\) is obtained for both cases (0.15 for the study of Richards and Richardson [40] and 0.18 for the study of Shadish and Baldwin [41]), while the variance of the \({\tau }^{2}\) estimates is almost fortyfour times larger for latter (0.07) than for the former (0.002). In other words, estimates of \({\tau }^{2}\) range from 0.11 to 0.39 in study of Richards and Richardson, while for Shadish and Baldwin’s study \({\tau }^{2}\) estimates range from 0.002 to 1.18. A pertinent conclusion would be that the deviation from normality could be affecting the variability of the heterogeneity estimates but, is this correct? Does deviation from normality affect all estimators equally? Are the most robust estimators those that make no normality assumptions? In order to answer these questions, simulation studies are needed.
Previous literature
Even though several simulation studies have assessed the influence of the lack of normality of the random effects on the metaanalytic results [1,2,3], one of the few studies that in the context of metaanalysis of standardized mean differences has reported results referring to how this lack of normality affects the estimation process of the heterogeneity parameter has been the study by Kromrey and Hogarty [42], and can therefore be considered as a precursor to the present work. These authors compared the performance of three estimators of \({\tau }^{2}\) (CA, DL and ML) and found that all of them demonstrated extreme sensitivity to violations of the assumptions of normality. Their simulation results showed that the CA estimator remained essentially unbiased under normal scenarios, whereas the ML and DL estimators evidenced substantial bias under conditions of a small number of primary studies or small sample sizes. However, under nonnormal conditions the CA estimator showed the greatest bias of the three estimators. With respect to the bias of the CA estimator, these authors imply that, while under normal conditions CA was practically unbiased (maximum bias of 0.07), under nonnormal conditions its performance depended on the sample size of the primary studies: “with small samples, substantial positive bias was evident as \({\tau }^{2}\) increased, but with large samples, relatively unbiased results were obtained”. More specifically, for conditions simulated with skewness = 2 and kurtosis = 6, for example, the estimated bias reached as high as 0.69 with \({\tau }^{2}=1\) and an average sample size of 10 but did not exceed 0.03 with samples of 200. Therefore, could the sample size of primary studies act as a protective factor for the bias of heterogeneity estimators in nonnormal scenarios? With respect to the variability of \({\tau }^{2}\) estimates, Kromrey and Hogarty [42] only reported results under normal conditions and concluded that ML obtained the lowest standard errors, followed by DL, while CA showed the largest sampling errors.
Although there are no other simulation studies assessing the performance of heterogeneity estimators in nonnormal parametric scenarios, there are several simulation studies [21, 30, 43,44,45] comparing them under normal conditions that have not always reached the same conclusions regarding which estimator has the best properties, possibly due to differences in the simulation design. Table 2 shows the values for the overall effect, the amount of heterogeneity, the number and average sample size of the primary studies included in the metaanalyses of standardized mean differences generated in these previous simulation studies, along with the number of replications per simulation condition and the heterogeneity estimators analyzed in each case. Viechtbauer [21] found that there was an inverse relationship between bias and efficiency of the estimators analysed in his simulation study and concluded that the CA procedure was unbiased across all the simulated conditions but was the one that showed the greatest mean square error (MSE) among the DL, HSiv, ML, and REML estimators. Novianti et al. [43] explained that CA, DL, DL2, SJ(CA), MP and REML were comparable, showing relatively small bias for small amounts of heterogeneity. But, in contrast, the SJ estimator largely overestimated the real value of \({\tau }^{2}\) in most cases. Petropoulou and Mavridis [44] compared in terms of bias twenty frequentist and Bayesian estimators. In their simulation, the DLb and DLp estimators showed to be less biased in all conditions, followed by the REML and HM. Langan et al. [45] compared estimators similar to those previous simulation studies in terms of relative bias and MSE. These authors found that DL2 and REML, despite having a negative bias in a small number of scenarios, performed similarly and had relatively low bias and low MSEcompared to the other estimators, even when there were substantial differences in the sample sizes of the primary studies within the same metaanalysis. Finally, with respect to the simulation study carried out by Boedeker & Henson [30], the estimator that showed the best performance with regard to bias and MSE over most conditions was that of MP followed by CA, REML, RB and those fully Bayesian focused on the posterior median with prior \(\Gamma (0.001, 0.001)\).
These simulation studies often end up advising the use of one estimator or another depending on very specific conditions of the number of studies, the sample size, the unknown amount of heterogeneity, among other factors, although among the estimators most recommended for continuous data, as the standardized mean differences, we can find the CA, MP, and REML procedures.
In addition to all the simulation factors taken into account in the previous simulations, we consider it necessary to examine how deviation from normality affects the estimation of the heterogeneity parameter, since it is a condition evidenced in real metaanalyses. The estimation of the parameter usually involves a greater negative bias the greater the amount of real heterogeneity [21, 30, 43,44,45]. This deserves to be taken into account when reporting the conclusions of a metaanalysis, where often the small number of studies and sample sizes do not allow a proper estimation of \({\tau }^{2}\). Therefore, biased and very unstable \({\tau }^{2}\) estimates may be found. If the role that the deviation from randomeffects normality can play is also overlooked, the conclusions of the metaanalysis can be seriously compromised.
Methods
Aim of the present study
In this study, we aimed to compare the performance of the heterogeneity estimators previously presented when the assumption of normality for the distribution of parametric effects is altered for several reasons.
Primarily, we would like to extend the results of Kromrey and Hogarty [42] to a larger number of estimators, especially those more novel procedures. The estimators proposed by Lin et al. [17] have only been evaluated in metaanalyses of rare binary events [46], but to our knowledge their performance remains unknown when the effect size belongs to the family of mean differences. At the same time, the estimators proposed by Viechtbauer [19] were recently developed as improved versions of previously proposed estimators but have not yet been examined or compared with other procedures.
Secondly, we would like to know how the deviation from normality influences the heterogeneity estimation. Specifically, we were interested in whether all the estimators were affected the same way and whether the estimators with better properties under normality are also the preferred ones when that assumption does not hold. Regarding the latter point, the simulation works mentioned above should help us to rank the estimators already studied in terms of their bias and efficiency in normal scenarios. However, since the results vary from one study to another, we believe that the most correct approach is to simulate new normal randomeffects conditions to serve as a starting point to compare the performance of the heterogeneity estimators under nonnormal conditions.
To do so, we carried out a Monte Carlo simulation study in R software [47] where we simulated data using the standardized mean difference as the outcome measure, given it is a popular index in psychology and other social and health sciences [48]. Throughout this section the data generation, the simulation factors and the outcome variables evaluated are explained and justified.
Data generating process
Data for the primary studies were generated following a twogroup (experimental and control) design with respect to a continuous dependent variable, and the outcome measure used was the standardized mean difference, also known as Cohen’s d. So far, the nomenclature used to refer to the parametric and estimated effect sizes has been \({\theta }_{i}\) and \({\widehat{\theta }}_{i}\), involving any effect size index. Since from now on we will only talk about the standardized mean difference, we will refer to the parametric and estimated effects as \({\delta }_{i}\) and \({g}_{i}\), respectively.
To simulate a single metaanalysis, a parametric effect size \({\delta }_{i}\) was randomly selected out of a distribution of parametric effect sizes with mean \({\mu }_{\delta }=\) 0.5 and a specific variance \({\tau }^{2}\) for each of the \(k\) primary studies. In the present work, the value of \({\mu }_{\delta }\) has not been varied (included as a factor in the simulation) since previous work [21, 43, 44] has shown that it has no effect on the estimation of \({\tau }^{2}\). Next, following the work of Hedges [49], an observed Cohen’s d value for each primary study \({g}_{i}\) was randomly sampled from a distribution that was \(1/\sqrt{{\widetilde{n}}_{i}}\) times a noncentral \({t}_{i}\) random variable, where \({\widetilde{n}}_{i}={n}_{i}^{E}\bullet {n}_{i}^{C}/({n}_{i}^{E} + {n}_{i}^{C})\), and \({n}_{i}^{E}\) and \({n}_{i}^{C}\) being the sample sizes for the experimental and control groups, respectively. The noncentral \({t}_{i}\) distribution had a noncentrality parameter \(\sqrt{{\widetilde{n}}_{i}}{\delta }_{i}\) and \({m}_{i}\) degrees of freedom, where \({m}_{i}={n}_{i}^{E} + {n}_{i}^{C}2\). Hedges and Olkin [50] showed that \(g\) is a positively biased estimator of Cohen’s d, and proposed a nearly unbiased estimator which is computed as \({g}_{i}^{U}=c({m}_{i})\bullet {g}_{i}\), where \(c({m}_{i})\) is a correction factor for small sample sizes given by.
Once a Cohen’s d unbiased estimate \({g}_{i}^{U}\) was obtained, the estimate of the withinstudy variance of each primary study, which corresponds to the sampling variance of \({g}_{i}^{U}\), was computed as.
since the estimator presented in Eq. 3 has shown to be the least biased (although not the most efficient) of the main known estimators for the sampling variance of \({g}_{i}^{U}\) [51]. For a detailed analysis of this and other alternative estimators of the sampling variance of \({g}_{i}^{U}\) and the software tools where they are implemented, we refer readers to the work of Suero et al. [51]
Simulation conditions
The factors manipulated in this simulation were, on the one hand, those already studied previously: the number and sample size of the primary studies, and the amount of heterogeneity. And, on the other hand, the shape of the true effects distribution, which has always been established as a normal distribution in preceding simulation works. To identify a range of realistic scenarios in the field of social and health sciences, the manipulated conditions in the current study were set according to the results of a systematic review of 54 meta‐analyses on the efficacy of psychological interventions using different types of standardized mean differences [39].
For the number of studies k, five values were considered, 10, 30, 50, 70, and 90, corresponding to a small‐to‐large number of studies for the meta‐analyses. To model the sample sizes of the primary studies \(N\), we followed the sample size distributions of those 54 metaanalyses included by RubioAparicio et al. [39] These distributions were positively skewed, with an average skewness coefficient of 1.423. To emulate a similar distribution, we used a \({\chi }^{2}\) distribution. Since the skewness coefficient for the \({\chi }^{2}\) distribution is calculated as \(\sqrt{8/v}\) (\(v\) representing its degrees of freedom), equaling the skewness coefficient to 1.423 results in a \({\chi }^{2}\) distribution with 3.95 degrees of freedom. In the present simulation, the average total sample size of the primary studies N was set to 20, 40, 60, 80, and 100. As the expected value of the \({\chi }^{2}\) equals its degrees of freedom, to model the distribution of each average sample size condition, \(N\) 3.95 was added to the values of the previous \({\chi }^{2}\) distribution, resulting in distributions with 3.95 degrees of freedom and mean \(N\). From these distributions, a value for the total sample size of each primary study was randomly generated. Half of this value, rounded to the nearest integer, was the sample size for the experimental \({n}_{i}^{E}\) and control \({n}_{i}^{C}\) groups of the \({i}^{th}\) study and, therefore, \({n}_{i}^{E}={n}_{i}^{C}\).
Furthermore, a wide range of values for the population between‐studies variance or heterogeneity was considered. As found in previous reviews, estimates for \({\tau }^{2}\) in metaanalyses of health and social sciences range from 0 to 1 (or even greater values), with a higher concentration in the 0 to 0.1 range. Therefore, in the present work the values 0.000, 0.010, 0.025, 0.050, 0.075, 0.100, 0.250, 0.500, 0.750, 1.000 were considered for \({\tau }^{2}\).
The shape of the distribution of the parametric effect sizes \(s\) was manipulated through six combinations of skewness and kurtosis values. First, a normal scenario was set, where skewness and kurtosis equaled zero. Second, five nonnormal conditions were considered based on the results from RubioAparicio et al. [39] The skewness distribution of the 54 meta‐analyses presented a median value of 0.52, with 25th and 75th percentiles of 0.18 and 1.1 and minimum and maximum values of − 2 and 3.67, respectively. Based on these results, a wide range of skewness values of − 2, − 1, 0, 1, and 2 were selected to simulate the parametric effect distribution. The nonlinear relationship exhibited by the 54 pairs of skewness and kurtosis values found in the systematic review was used to predict the kurtosis values. A nonlinear predictive model previously fitted to this dataset [3], lead to the predictive equation \(Kurtosis = 0.581 + 0.023 * Skewness + 1.069 * {Skewness}^{2}\), resulting in five combinations of skewness and kurtosis values (− 2, 3.65), (− 1, 0.47), (0, − 0.58), (1, 0.51), and (2, 3.74). We used the rpearson() function from the PearsonDS package [52] to generate random values from a distribution of parametric effect sizes with mean 0.5, and a given variance, skewness, and kurtosis, which is based on the Pearson distribution system [53]. Fig. 1 presents the probability density functions of the parametric effect size distributions for the six simulated combinations of skewness and kurtosis, with \({\mu }_{\delta }=0.5\) and \({\tau }^{2}=0.05\).
Table 3 summarizes the parameters being varied in this simulation work. In the end, the total number of conditions was 1350 [5 (\(k\) values) × 5 (\(N\)) × 9 (\({\tau }^{2}\)) × 6 (\(s\))], and for each one 1,000 meta‐analyses were generated. Therefore, 1,350,000 meta‐analyses were simulated.
Analytic procedures
The simulation was programmed in R 4.1.0 [47] using several packages: PearsonDS [52] (v1.2.2), metafor [54] (v3.1.18), bootstrap [55] (v2019.6), rsample [56] (v0.1.0), bayesmeta [57] (v2.6), rjags [58] (v4.10), R2jags [59] (v0.6.1), and runjags [60] (v2.2.0.2). Complete data and R code files used for the simulation and analyses reported below are available in the supplementary material [32].
In each metaanalysis, all the estimators for the heterogeneity parameter described in the Background section were computed. That is, twelve estimators based on the method of moments, two based on maximum likelihood, another two based on least squares, three more focused on artifact correction, two nonparametric estimators, and four Bayesian procedures.
However, the fully Bayesian procedure allows any a priori probability distribution for the parameters of the randomeffects model (that is, for \({\mu }_{\delta }\) and \({\tau }^{2}\), since the withinstudy variances are assumed to be known). To be consistent with previous work that had studied the performance of heterogeneity estimators, we chose seven different combinations of vague or weakly informative priordistributions for both parameters following Boedeker & Henson [30]. Specifically, different priors were used to model a function of heterogeneity, whereas for \({\mu }_{\delta }\) the prior was a normal distribution with mean and variance equal to 0 and 1000, respectively, in all cases. Priors for \(\tau\) included two uniform distributions with limits of 0 to 2 and 0 to 100, and three halfCauchy distributions with scale parameters 1, 5, and 25. Whereas priors for precision \((1/{\tau }^{2})\) were \(\Gamma (0.001, 0.001)\) and \(\Gamma (0.1, 0.1)\).
We would like to point out that previous studies, as discussed by Röver et al., [61] advise against using the inverse gamma distribution to model the variance prior because this can force the variance estimate to be positive and often too much probability is allocated to very large heterogeneity values. Additionally, when the \({\mu }_{\delta }\) prior is a normal distribution (as set in the present simulation work), the variance of the \({\mu }_{\delta }\) posterior distribution increases proportionally to \(\tau\), which can impact the prediction intervals of \({\mu }_{\delta }\), for example. In contrast, halfCauchy distributions, since they exhibit approximately uniform behavior near zero heterogeneity and monotonically decreasing probability with increasing values of heterogeneity (which guarantees integrability of the lower and upper tails), and bounded uniform distributions, provided that the boundary \([0, a]\)is reasonably large, are advisable [61].
Finally, in addition to using seven prior distributions, since the posterior distribution for \({\tau }^{2}\) is most likely not symmetric, we chose the posterior mean, median, and mode as the resulting point estimates for the heterogeneity parameter. Therefore, 21 different fully Bayesian procedures for \({\tau }^{2}\) were included in the present simulation work. Overall, we compared the performance of 45 (21 frequentist and 24 Bayesian) point estimators for the heterogeneity parameter.
Performance criteria
To compare the performance of the heterogeneity estimators described above, we focused on the following outcome variables. First, point estimators were compared in terms of absolute bias, defined as the average difference between the point estimate \({\widehat{\tau }}_{pj}^{2}\) for procedure \(p\) and the actual value of \({\tau }^{2}\) along the 1,000 metaanalyses in each simulation condition (\(j=1,\dots ,\mathrm{1,000}\)),
Secondly, the precision of the estimates produced by the point estimators is commonly assessed through the MSE, which is defined as the variability of the point estimates for procedure \(p\) with respect to the actual \({\tau }^{2}\) value across the 1,000 metaanalyses of each condition,
However, \(MSE\) can be decomposed according to the variance and bias of procedure \(p\) into \(MSE\left({\widehat{\tau }}_{p}^{2}\right)=Var\left({\widehat{\tau }}_{p}^{2}\right)+{\left[Bias\left({\widehat{\tau }}_{p}^{2}\right)\right]}^{2}\), and therefore results regarding \(MSE\) may be hiding the variability of the point estimates in those scenarios where procedure \(p\) shows a greater bias. This is the reason why the second outcome variable to compare the performance of the heterogeneity estimators was their variance. The variance of estimator \(p\) can be defined as the mean squared difference between the point estimate for procedure \(p\) and the expected value of these point estimates \(E\left[{\widehat{\tau }}_{pj}^{2}\right]\) along the 1,000 metaanalyses in each simulation condition,
Although the variance was our second outcome variable, results regarding the MSE were also computed and discussed.
Most of the heterogeneity estimators included in this work are computed analytically and, therefore, a resulting estimate is always guaranteed. Indeed, some of the iterative procedures (i.e., the r and m estimators) [17] were programmed in such a way that they must always provide an estimate. However, the rest of the iterative estimators (MP, ML, REML, BM, and all fully Bayesian procedures) can lead to convergence problems. Thus, to ensure that 1,000 estimates for each estimation procedure were available across all the simulation conditions, the data of those metaanalyses for which at least one heterogeneity estimator could not be computed were deleted and new data was generated instead. Furthermore, when this occurred, these situations were taken into account, resulting in a nonconvergence rate for each iterative procedure in each simulation condition. However, the nonconvergence rates of these procedures were equal to zero for all the simulation conditions, except for the ML procedure in only two conditions. The first of these two conditions implied a \({\tau }^{2}=0.75\), \(k=10\), \(N=20\), and a randomeffects distribution with skewness and kurtosis values equal to 1 and 0.51, respectively, while the second simulation condition implied a \({\tau }^{2}=1\), \(k=10\), \(N=20\), and a randomeffects distribution with skewness and kurtosis values equal to 2 and 3.74, respectively. In both conditions, the ML procedure did not converge on only one of the 1,000 metaanalyses generated and, therefore, it was only necessary to generate new data for a single metaanalysis.
Results
Absolute bias in normal scenarios
Figures 1 and 2 present the absolute bias of the frequentist and Bayesian estimators, respectively, as a function of the amount of heterogeneity, the number of primary studies, and the average sample size. In addition, these results are presented separately for each condition of the shape of the randomeffects distribution. Due to the huge number of estimators available for the heterogeneity parameter, those estimators that showed similar performance were grouped together and their data were averaged to facilitate the understanding of the results. To make the comparison between the frequentist and Bayesian estimators easier, the plots depicted in Figs. 1 and 2 present the same amount of absolute bias (0.60 points) on the yaxis.
Given the main focus of the present work is to compare the performance of these estimators from normal to nonnormal randomeffects scenarios, we will start by describing the results under normal conditions. The amount of heterogeneity was the simulation factor that affected the bias of the estimators to a greater extent. As can be seen in plot A of Figs. 1 and 2, most estimators obtained slightly positively biased estimates for very low values of \({\tau }^{2}\) (0.01 – 0.025) and more negatively biased estimates as the actual value of \({\tau }^{2}\) increased. However, some estimators showed a different trend. The RBp estimator yielded positively biased estimates regardless of the amount of \({\tau }^{2}\), but followed the general trend of obtaining lower estimates as \({\tau }^{2}\) increased, that is, its positive bias decreased as \({\tau }^{2}\) increased. The BM estimator always overestimated \({\tau }^{2}\) and its bias showed an invertedU relationship with respect to the amount of heterogeneity, gradually increasing to reach a maximum average absolute bias of 0.23 when the actual \({\tau }^{2}\) value was 0.25 (implying a maximum relative bias of almost 100%). Finally, those fully Bayesian estimators focused on the posterior mean overestimated \({\tau }^{2}\) increasingly the larger the true value of the parameter.
Graphs G and M in Fig. 1 show that the number of primary studies had no noticeable effect on the bias of the frequentist estimators, whereas a large sample size of primary studies reduced the absolute bias: once an average sample size of between 40 and 60 observations was reached, the bias of the frequentist estimators tended to stabilize. The absolute bias of Bayesian estimators stabilized as the number of primary studies increased up to 50 and the average sample size exceeded 60 observations, as presented in plots G and M of Fig. 2.
Absolute bias in nonnormal scenarios
Compared to the normal scenarios, the departure from normality in the distribution of random effects accentuated the effect of (seems to interact with) the amount of heterogeneity for the vast majority of estimators but did not alter the relative ranking of the estimators with regards to their bias.
On the one hand, the order of the heterogeneity estimators with respect to their absolute bias was not altered by the lack of normality, except for the LCHr and LCHm estimators. These estimators showed a medium bias when the normality of the random effects was held (plot A, Fig. 1), whereas in those scenarios where the deviation from normality was most pronounced (plots B and F), these estimators were among the most biased.
On the other hand, the bias trends of most estimators with respect to the amount of heterogeneity became more pronounced as the distribution of random effects departed from normality. That is, in general, even lower estimates were obtained for larger amounts of \({\tau }^{2}\) as the departure from normality increased. This can be seen in the scenarios depicted in plots B and F of Figs. 1 and 2, where the absolute bias of most estimators showed larger negative slopes than in the normal scenario depicted in plot A.
The number of the primary studies did not seem to be a protective factor against a lack of normality in the random effects for the frequentist estimators, but the sample size was shown to attenuate the effect of nonnormality on the relationship between the amount of heterogeneity and the bias of some frequentist estimators. Figures S1 and S2 of the supplementary material[32] present a more detailed analysis of the absolute bias of the frequentists estimators as a function of the number and average sample size of primary studies, respectively, the shape of the randomeffects distribution. As can be seen, the effect of the lack of normality on the bias of most estimators was very similar regardless of the number of primary studies included in the metaanalysis. However, some heterogeneity estimators (MBH, SJ(CA), MPM, SJ, MP, CA2, DL2, DLm, HSss, ML, and REML) showed similar amounts of bias for metaanalyses of studies with a smaller average sample size in normal scenarios and studies with a larger average sample size in those scenarios where the deviation from normality was most extreme. Although the deviation from normality also affected the bias of these estimators to some extent regardless of the average sample size, its impact was smaller as the sample size increased. It is important to note that, although the CA estimator is represented in the same group as the MBH, SJ(CA) and MPM estimators in Figure S2, the average sample size did not represent a protective factor against nonnormality for this first estimator, which remained practically unbiased under both normal and nonnormal randomeffects scenarios.
The number and average sample size of primary studies also decreased the effect of nonnormality on the relationship between the amount of heterogeneity and the bias of most Bayesian heterogeneity estimators. Figures S3 and S4 of the supplemental material [32] present in more detail the bias of the Bayesian estimators as a function of the number and average sample size of primary studies, respectively, and the shape of the randomeffects distribution. As can be appreciated, Bayesian estimators showed lower amounts of bias for metaanalyses with 30 studies in nonnormal scenarios than for metaanalyses with 10 studies in normal scenarios. Likewise, most of these estimators showed similar amounts of bias for metaanalyses with studies of an average sample size of 40 observations in scenarios where the deviation from normality was most pronounced and for metaanalyses with studies of an average sample size of 20 in normal conditions. Again, although the deviation from normality increased the bias of Bayesian estimators to some extent regardless of the number and average sample size of primary studies, its impact was smaller as the number of primary studies increased.
Finally, along all the simulated scenarios, CA, MBH, SJ(CA), and MPM showed the least biased estimates among the frequentist estimators. Within this group performance was very homogeneous in normal scenarios (the average bias ranged from 0.005 to 0.002), but as the distribution of random effects departed from normality, CA remained essentially unbiased (average bias of 0.003 for the 6^{th} shape of the randomeffects distribution) while the MBH, SJ(CA) and MPM estimators slightly over or underestimated \({\tau }^{2}\) depending on the simulated scenario (average bias of 0.006, 0.015 and 0.013, respectively). Furthermore, the bias of these estimators together with SJ, MP, CA2, DL2, DLm, HSss, ML and REML was less influenced by the lack of normality in the randomeffects distribution than the rest (LCHr, LCHm, GENQM, DLp, DL, HSk, DLb, HSiv, and HM) of the frequentist estimators.
Concerning Bayesian estimators, those focused on the posterior median showed the lowest bias across all the simulated conditions, followed by the RB estimator. In normal scenarios, the average bias of the fully Bayesian mediancentered estimators ranged from 0.021 to 0.005, while the average bias of the RB estimator was 0.019. However, when the distribution of random effects departed from normality, the absolute bias increased for these Bayesian procedures (the average bias ranged from 0.052 to 0.024 for the fully Bayesian mediancentered estimators in the 6^{th} shape of the randomeffects distribution), while became negative for the RB estimator (average bias of 0.018). In addition, it is worth noting that the absolute bias of the RB estimator (together with that of RBp) was less affected by nonnormality than that of the fully Bayesian and the BM estimators.
Variance in normal scenarios
Figures 3 and 4 present the variance of the frequentist and Bayesian estimators, respectively, as a function of the amount of heterogeneity, the number of primary studies, and the average sample size. These results are presented separately for each condition of the shape of the randomeffects distribution. To make the comparison between the frequentist and Bayesian estimators easier, the plots depicted in Figs. 3 and 4 present the same amount of variance (0.30 points) on the yaxis.
Again, since the main goal of the present work is to compare the performance of these estimators from normal to nonnormal randomeffects scenarios, we will start by describing the results under normal conditions. In general terms, the variance of all heterogeneity estimators decreased as the true amount of heterogeneity became smaller and as the number of the primary studies became larger. Although the efficiency of all heterogeneity estimators increased slightly as the average sample size became larger, this simulation factor did not affect the variance of the heterogeneity estimators to the same extent as the amount of heterogeneity and the number of studies.
Considering the amount of heterogeneity, it can be seen in plot A of Figs. 3 and 4 that all estimators showed greater variance as the heterogeneity increased, except for the BM estimator which showed a different trend. Although the variance of the BM estimator also increased as \({\tau }^{2}\) increased, it was more variable than the rest of estimators for \({\tau }^{2}\) values between 0.01 and 0.25 but obtained the lowest variances when \({\tau }^{2}\) exceeded 0.50.
Variance in nonnormal scenarios
Deviation from normality in the distribution of random effects accentuated the effect of (seemed to interact with) the amount of heterogeneity and the number of studies for most estimators. That is, in general, greater variances were obtained for larger amounts of \({\tau }^{2}\) as the departure from normality increased, as can be seen in the scenarios depicted in plots B and F of Figs. 3 and 4, where the variance of most estimators showed larger positive slopes compared to the normal scenario depicted in plot A. Furthermore, even larger variances were also obtained for a smaller number of studies as the departure from normality was more extreme, as shown in plots H and L of Figs. 3 and 4 compared to the normal scenario depicted in plot G. However, the order of the estimators with respect to their variance (variance ratio) did not alter from normal to nonnormal scenarios.
The number of primary studies was shown to decrease the effect of nonnormality on the relationship between the amount of heterogeneity and the variance of all heterogeneity estimators. Figures S5 and S6 of the supplemental material [32] present a more detailed analysis of the variance of the frequentists and Bayesian estimators, respectively, as a function of the number of primary studies and the shape of the randomeffects distribution. As can be seen, most heterogeneity estimators showed similar amounts of variance for metaanalyses with 10 studies in normal scenarios and for metaanalyses with 30 studies in those scenarios where the deviation from normality was most extreme. Although the deviation from normality affected the variance to some extent regardless of the number of primary studies, its impact was smaller as the number of primary studies increased. On the contrary, the average sample size of the primary studies did not seem to be a protective factor against a lack of normality in the random effects, since the slopes of the lines for the variance of the different estimators in the condition where normality was held were not altered in those scenarios where the deviation from normality was greater. This can be also seen in Figures S7 and S8 of the supplemental material, which present in more detail the variance of the frequentists and Bayesian estimators, respectively, as a function of the average sample size of primary studies and the shape of the randomeffects distribution.
Finally, those estimators that had previously shown to be less biased, showed greater variances than the rest of the estimators analyzed. Among the frequentist estimators, CA, MBH, SJ(CA), and MPM were the most variable both, in normal (the average variance ranged from 0.022 to 0.024) and nonnormal scenarios (the average variance ranged from 0.048 to 0.061 for the 6^{th} shape of the randomeffects distribution). The frequentist estimators that showed to be most efficient were the DLb, HSiv and HM estimators both, in normal (the average variance ranged from 0.011 to 0.012) and nonnormal conditions (the average variance ranged from 0.013 to 0.014 for the 6^{th} shape of the randomeffects distribution).
Within the Bayesian procedures, those fully Bayesian estimators centered on the posterior median and the RB estimator yielded intermediate variances among the Bayesian estimators analyzed both, in normal (the average variance ranged from 0.018 to 0.028) and nonnormal scenarios (the average variance ranged from 0.041 to 0.056 for the 6^{th} shape of the randomeffects distribution). The Bayesian estimator that showed to be the most efficient was the BM estimator, obtaining an average variance of 0.014 in normal scenarios, and 0.026 for the 6^{th} shape of the randomeffects distribution.
To conclude the Results section, we briefly present how the bias and variance results translate into MSE. Supplemental materials [32] also include Figures S9 and S10 that present the MSE of the frequentist and Bayesian estimators, respectively, as a function of the amount of heterogeneity, the number of primary studies, and the average sample size. These results are also presented separately for each condition of the shape of the randomeffects distribution. To make the comparison between the frequentist and Bayesian estimators easier, the plots showing MSE depicted in Figures S9 and S10 have the same yaxis (0–0.35 points).
In normal randomeffects scenarios, all the heterogeneity estimators obtained similar results regarding MSE. In these conditions, the simulation factor that most affected the MSE was the amount of heterogeneity: Most estimators showed a greater MSE as the amount of heterogeneity increased (except for the BM estimator). At the same time, most estimators showed an increase in their MSE for those scenarios in which metaanalyses with fewer than 30 studies and an average sample size of less than 40 observations were simulated.
Although all the heterogeneity estimators obtained similar results regarding MSE, the deviation from normality resulted in an increase of the MSE of all the estimators and accentuated the differences in terms of MSE among the estimators analyzed.
Discussion
The present paper is focused on the performance of the point heterogeneity estimators under conditions where the distribution of random effects departs from normality compared to normal scenarios. For this purpose, we carried out a Monte Carlo simulation study where data for metaanalyses based on the standardized mean difference were generated. In total, 21 frequentist and 24 Bayesian estimators have been compared in terms of absolute bias and variance, including several procedures (LCHm, LCHr, MPM, and GENQM) [17, 19] that have not been compared in similar simulation studies so far.
One of our main goals was to answer the question of whether the best estimator under normal parametric conditions remained the same in nonnormal conditions. In this respect, our results show that, fortunately, the estimators ranking in terms of their absolute bias and variance does not change when the normality in the distribution of parametric effects is altered (except for the LCHr and LCHm estimators). We consider that these are good news for metaanalysts since our results suggest that it is not needed to choose one estimator or another depending on how the random effects are believed to be distributed.
However, the conclusion cannot be that a lack of normality in the distribution of parametric effects has no implications for the estimation of \({\tau }^{2}\). Although the magnitude of its effect may differ from one procedure to another, most estimators obtained lower mean \({\tau }^{2}\) estimates and greater variances as the parametric distribution deviated from normality. Moreover, since some estimators showed to be more influenced by the nonnormality than others, the variability among the mean \({\tau }^{2}\) estimates increased as the distribution of random effects deviates from normality. Our results in this regard may partly explain why the \({\tau }^{2}\)estimates computed for the study of Shadish and Baldwin [41], which summarized estimates whose distribution was farther from normal, vary to a greater extent (from 0.004 to 1.18) than for the study of Richards and Richardson [40] (\({\widehat{\tau }}^{2}\) range goes from 0.11 to 0.39).
In general, we could say that those estimators free from normality assumptions are not necessarily the most robust when this assumption does not meet. In fact, among the frequentist procedures based on Cochran's \(Q\)statistic that do not necessarily assume any assumption of normality, some of them have shown less bias (and/or variance) and others more than the procedures based on maximum likelihood or weighted least squares, which do assume this assumption. On the other hand, the estimators developed by Rukhin [27], which are more flexible but assume certain assumptions derived from the normality of the random effects, hardly suffer any variation in their performance in nonnormality scenarios where the kurtosis have been altered.
Our results suggest that a large average sample size of primary studies seems to be a protective factor against nonnormality with respect to the bias of most Bayesian, but only of some frequentist heterogeneity estimators. That is, lower estimates of \({\tau }^{2}\) were obtained the less normal the distribution of random effects was. Nevertheless, most of the Bayesian and some frequentist estimators analyzed (MBH, SJ(CA), MPM, SJ, MP, CA2, DL2, DLm, HSss, ML, and REML) showed similar amounts of bias for smaller average sample sizes in normal scenarios and for larger average sample size in those scenarios where the deviation from normality was most extreme. Indeed, this same trend was found for Bayesian estimators with respect to the number of primary studies included in the metaanalysis. With respect to the variance of the estimators analyzed, the number of studies (but not their average sample size) seems to be a protection factor against a lack of normality. In other words, most heterogeneity estimators showed similar amounts of variance for metaanalyses with 10 studies in normal scenarios and for metaanalyses with 30 studies in those scenarios where the deviation from normality was most extreme. Indeed, the effect of nonnormality became smaller as the number of primary studies increased.
Regarding the new estimators tested, the procedures proposed by Lin et al. [17] exhibited substantial bias in normal scenarios, which increase as the distribution of random effects departed from normality. However, although they are not among the most efficient estimators, the variability of their estimates was not altered by the nonnormality of the random effects. Concerning the estimators proposed by Viechtbauer [19], the MPM estimator was on average slightly less biased than the MP estimator across the simulated scenarios, but also slightly more variable. Specifically, under less favorable conditions, the estimated bias of MPM was 33% lower than that of MP whereas the variability of the former was 15% higher than that of the latter. The GENQM estimator showed to be substantially more biased than MPM, nevertheless, this difference in bias became practically null the more bias both estimators showed, and as the randomeffects distribution deviated from normality. In contrast, the variance of the GENQM estimates was between 40 and 75% lower than that of MPM.
With respect to previous findings, our results agree with those of Kromrey and Hogarty [42] in that, in general terms, the CA estimator appears to be less biased than DL and ML. However, according to their results, CA showed more bias than DL and ML in nonnormal settings for primary studies with small sample sizes. This last finding differs from the results found in our work, where the bias of CA was minimally affected by the sample size of the primary studies, and in no case showed a bias greater than that of ML or DL. In addition, we have not found the sample size to be a protective factor against nonnormality as Kromrey and Hogarty [42] seem to suggest with respect to the CA estimator. These authors stated that CA was essentially unbiased in normal settings, reaching a maximum bias of 0.07 with samples averaging 10 subjects per primary study (regardless of the number of primary studies). While in nonnormal scenarios, this bias reached 0.69 for an average sample size of 10 and decreased to 0.03 with sample sizes of 200 observations. The difference in the slope of the lines that would model the decrease in the CA bias as a function of the average sample size would have led us to think that this factor may have a protective role against nonnormality: obtaining similar amounts of bias between normal and nonnormal scenarios with relatively large samples. However, we have not found such a difference in our results.
One possible reason to explain this inconsistency could be the fact that the sample sizes that these authors simulated were twice as small and large as ours (ranged from an average of 10 to 200 observations per primary study, whereas ours ranged from an average of 20 and 100). To find out whether this was the underlying explanation for the differences between our results, we carried out a small simulation in which the conditions mentioned by Kromrey and Hogarty [42] in their results were replicated. Figure S11, available at the supplementary material [32], shows the results obtained. Once more, these results did not show that the CA estimator was more biased than the DL and ML estimators under nonnormal conditions, even for very small average sample sizes such as 10 observations per primary study. The bias of CA also did not decrease when the average sample size increased. Nonetheless, we found that the bias of the DL procedure decreased and stabilized around 0.4 when changing from an average sample size of 10 to 20 observations per study, something we could not observe previously since sample sizes below 20 were not included in our simulation study.
Our results for those conditions where the normality of the random effects distribution was held (\(s=1)\) agree in many respects with the findings of those previous simulation studies [21, 30, 43,44,45] comparing different heterogeneity estimators under normal randomeffects scenarios. Although Viechtbauer [21] used average sample sizes six times larger than those used in our study (40, 80, 160, 320 and 640) and \({\tau }^{2}\) values ten times smaller (0, 0.01, 0.025, 0.05 and 0.1), our study replicated the results found in this previous simulation in terms of MSE, efficiency, and bias, with the exception that Viechtbauer [21] found the CA estimator to be unbiased in all conditions, whereas in our study it presented a slight positive bias (maximum 0.007) that decreased as \({\tau }^{2}\) reached 0.1. Likewise, our results also suggest that DL and REML present a similar bias for the range of \({\tau }^{2}\)values studied in Viechtbauer [21]. However, our study evaluates scenarios where \({\tau }^{2}\) reaches a maximum value of 1 and we found that REML and ML have a smaller and more similar bias as \({\tau }^{2}\) increases (maximum bias around 0.1) than DL and HSiv (around 0.2).
Although the \({\tau }^{2}\) values examined in the work of Novianti et al. [43] are extremely small (ranged from 0 to 0.0366) compared to those examined in our simulation, we agree with these authors in that, when the heterogeneity ranges from 0 to 0.05, the bias of all estimators analyzed by that these authors is relatively small and comparable, except for the SJ procedure which greatly overestimates the heterogeneity in all cases. At the same time, our results show, like those of Novianti et al. [43] that, as heterogeneity increases, the absolute bias of the analyzed procedures increases while the relative bias decreases. On the other hand, Novianti et al. [43] do not directly provide results referring to the efficiency of the estimators, but the trends they suggest (i.e., that efficiency decreases as \({\tau }^{2}\) increases and \(k\) and \(N\) decrease) are compatible with our findings.
Perhaps, the previous simulation study with which our results are least consistent is that of Petropoulou and Mavridis [44], who only reported results regarding the absolute bias of the estimators analyzed. These authors concluded that the bias of all estimators increased as heterogeneity increased, as we found in the present work, and that it decreased as the number of primary studies increased. Our results, on the contrary, show that the bias of the estimators decreases markedly as the sample size increases, but almost negligibly as the number of primary studies increases, although this decreasing trend depends on the procedure evaluated. While Petropoulou and Mavridis [44] claimed that REML was less biased than MP in most scenarios, we found just the opposite except for those scenarios where \({\tau }^{2}\) ranged from 0.01 to 0.025. We also did not find DLp and DLb to have a small bias in all conditions and to be the best performing procedures, in fact, our results point to them being among the most biased frequentist estimators as heterogeneity increases. Nor do we find the HM estimator to be the least biased when the heterogeneity ranges from 0.01 to 0.05, in fact it is one of the most biased frequentist estimators in these scenarios. Finally, we agree with Petropoulou and Mavridis [44] in that the RBp, SJ and BM procedures have a nonnegligible positive bias for a very wide range of heterogeneity values and should be avoided.
Our results agree with those found by Langan et al. [45] for the most part, except for the following points. These authors found that the DL procedure was one of the least negatively biased estimators, distinctly lower than MP for a medium number of studies. However, we found that MP always obtains a lower or similar bias to DL. While Langan et al.[45] claimed that HM has a comparatively lower MSE than the rest of the estimators in all scenarios, our results show that this procedure has one of the highest MSE among the frequentist estimators considered. To conclude, these authors also concluded that SJ(CA) showed a larger and positive bias as the sample size of the studies increased, whereas we found the opposite trend.
The simulation conditions of the study of Boedeker and Henson [30] are the most similar to those of the present work. This potentially explains why our results agree for the most part, except for the prior specification recommended for modeling the heterogeneity parameter in the fully Bayesian procedure. Our results agree with those of Boedeker and Henson [30] in that those fully Bayesian estimators centered on the posterior median were less biased than those centered on the posterior mean and mode, which in comparison tended to obtain larger and smaller \({\tau }^{2}\) estimates, respectively. However, we found that the procedure based on \(\left(\frac{1}{{\tau }^{2}}\right)\sim \Gamma (\mathrm{0.001,0.001})\) prior specification obtains estimates with a noticeably larger negative bias as heterogeneity increases than other prior distributions for \(\tau\), such as \(U(\mathrm{0,100})\) and \(U(\mathrm{0,2})\), or halfCauchy distributions with scale parameters 5 and 25.
Practical recommendations
The implications of an improper estimation of the heterogeneity parameter due to the nonnormality of the randomeffects distribution are diverse: While the mean effect and its confidence interval have been shown to be relatively robust against nonnormal conditions [1,2,3], its influence on the estimation of prediction intervals appears to be important [62, 63]. Returning to the two metaanalyses we used as examples in the Background section, for the study of Richards and Richardson [40], depending on the procedure chosen for estimating the heterogeneity parameter, prediction intervals computed from the 45 \({\tau }^{2}\) estimators here analyzed range from [1.24, 0.12] to [1.832, 0.6633], the width of the latter being 1.84 times the width of the former. This is not the case for the Shadish and Baldwin [41] study, where the distribution of effect estimates was more deviated from normality than in the previous case: prediction intervals range from [0.42, 0.77] to [1.36, 2.99], the latter being more than twelve times wider than the former.
To be aware of the potential threat of nonnormal random effects to the results of our metaanalysis, statistical tests have been developed to assess the possible deviation from normality [64]. However, the statistical power of these procedures may be inadequate. Another tentative solution, if we suspect that the distribution of parametric effects may not follow a normal distribution, is the application of more flexible models [62]. Nevertheless, the use of these models could result in an overfitting of the data if they are not applied correctly and, at the moment, the lack of these models in everyday software makes their implementation difficult.
In addition to the above, heterogeneity parameter estimators often exhibit a feature that makes it even more difficult to choose the best one: an inverse relationship between bias and efficiency, as evidenced also by previous works [21, 30, 43,44,45]. In other words, those estimators that tend to show less biased estimates are also those that tend to show more variability in their estimates, whereas none of the estimators actually dominates the others in terms of MSE. For example, the MP and REML are among the most advised frequentist estimators [9, 21, 30, 43,44,45]. For conditions simulated with skewness = 2 and kurtosis = 3.74, the estimated MP bias reached as high as 0.14 with \({\tau }^{2}=1\), \(k=10\), and \(N=20\), whereas that of REML reached as high as 0.27. However, for the same conditions the estimated variances of the MP and REML estimator were 0.65 and 0.48, respectively.
Despite the difficulties encountered, our results indicate that there are several estimators less biased that, although they show higher sample variances than the rest, in metaanalyses with a minimum number and average sample size of the primary studies seem to be the best option. Within the frequentist framework, CA, MBH, SJ(CA), and MPM, followed by MP, CA2, DL2, DLm, and HSss, showed the least bias although highest variance in most conditions. However, in metaanalyses with at least 90 studies with an average sample size of 60 observations, these estimators obtain a reasonably maximum amount of bias as the rest of the frequentist estimators given their decrease in sample variability, even in nonnormal randomeffects scenarios. If a procedure based on maximum likelihood is preferred, REML showed to be less biased but more variable than ML, although it obtained a higher bias than the estimators mentioned above for most of the simulated conditions. For REML to obtain a similar maximum bias as the rest of the estimators, also in nonnormal conditions, the average sample size should increase to 100 observations per primary study. In many actual metaanalyses these conditions will not be easily met, and in these cases our recommendation for applied metaanalysts is to evaluate the range of \({\widehat{\tau} }^{2}\) values that can be obtained from their data, as well as the implications that this variability may have on the pooled effect, its confidence interval and the prediction interval. To facilitate this task, we have developed the tau2() function in the free software R that allow to obtain the range of \({\widehat{\tau} }^{2}\) values obtained from the 45 estimators analyzed in this work from the effect estimates and the sample size of the primary studies. This function also returns the range for the combined effect size, its confidence interval, and its prediction interval, so that metaanalysts have an easytouse tool to help them report these results as sensitivity analyses until new statistical methods are developed that do not present these difficulties. The code of the tau2()function as well as an explanatory document are available as part of the supplementary material [32].
From a Bayesian perspective, those fully Bayesian procedures centered on the posterior median with \(\tau\) prior specifications such as \(U(0,100)\) and \(U(\mathrm{0,2})\), or halfCauchy distributions with scale parameters 5 and 25, showed less biased estimates than most of the Bayesian procedures in normal randomeffects conditions, including the RB estimator. In spite of this, as the randomeffects distribution departed from normality, these fully Bayesian estimators became more negatively biased while RB was insensitive to deviations from normality, and it has also showed a lower variance. In the event that it was necessary to employ a fully Bayesian procedure, we recommend applied metaanalysts to compute both, the posterior median and posterior mean, when their distribution of effect estimates departs substantially from normality. The reason behind is that all fully Bayesian procedures tend to obtain lower \({\tau }^{2}\) estimates as the deviation from normality increase. But, since those centered on the posterior mean always produce greater estimates than those centered on the posterior median, the formers yielded less biased \({\tau }^{2}\) estimates when the deviation from normality became extreme.
Limitations and future research
Given the huge number of simulation conditions, factors that could have important implications for the results have been omitted. One of these factors is the \({I}^{2}\) index, that is, the percentage of the total variability present in the effect estimates that is due to heterogeneity variance. Another two factors regarding the primary studies are the homogeneity of sizes and variances between the control and experimental groups. The works of Kromrey and Hogarty [42] and Langan et al. [45] lead us to believe that these factors could have implications for the bias and efficiency of \({\tau }^{2}\) point estimators, and we do believe that their effect should be evaluated in future studies. Some of the procedures for creating intervals around \({\tau }^{2}\) do not require previous point estimates, but others do, so including them in the present work would have substantially increase the number of analyzed procedures and would have required a higher amount of time and computational resources, which is why interval estimation of the heterogeneity parameter has not been addressed in the present work either. For those readers interested in providing a range of values for the heterogeneity parameter, we refer them to the simulation studies carried out by Boedeker and Henson [30] and Viechtbauer [65] for those scenarios in which the random effects follow and deviate from a normal distribution, respectively.
Another limitation of this work is that we were not able to explain why previous simulation studies [21, 30, 43,44,45] reached conclusions that are sometimes contradictory to the results of the present work. It is to be expected that these differences are due to the use of different simulation factors and the different levels set for each of them. However, it would be necessary to examine the possibility that these discrepancies are due to differences in the way the primary data were generated or in the code for computing many of the heterogeneity estimators that were not included in userfriendly software at the time the simulation study was conducted. Therefore, we would like to draw attention to the need to host the simulation code in one of the web repositories that have become so widespread, as well as the simulation data generated from it, since sometimes the lack of appropriate resources makes it difficult to run the code to replicate a simulation work.
Beyond the fact that different factors with varying levels are used in each simulation study, the overall findings reflect the great complexity involved in estimating the heterogeneity parameter in randomeffects metaanalyses. It could be thought that an important limitation of this type of studies is the lack of clear guidelines on which estimator to use. However, even knowing how all the factors that can be controlled or evaluated by the metaanalyst (deviation from normality in the distribution of effect estimates, number and average sample size of primary studies, amount of \({I}^{2}\), degree of homoscedasticity and equality of sample sizes between comparison groups, etc.) affect the \({\tau }^{2}\) estimation, we still could not choose which is the best estimator since the amount of actual heterogeneity is the main factor that affects its own estimation and remains unknown.
Finally, we would like to emphasize that our simulation is based on metaanalyses of standardized mean differences and, therefore, the results presented in this article can only be extrapolated to metaanalyses based on this same effect size index or others that are also asymptotically normally distributed.
Conclusions
The present work highlights the role that the deviation from normality may be playing in the conclusions of the metaanalyses that are carried out on a daily basis. Although the estimation and inference of the combined effect have proven to be sufficiently robust to the nonnormality of random effects, the estimation of the heterogeneity parameter appears to be affected to a greater extent. Real studies have been used to show how the estimation of \({\tau }^{2}\) may be impacted and how the conclusions of the prediction interval may vary, depending on the estimator chosen. Also, it should not be overlooked how variations in the estimated amount of heterogeneity may influence the conclusions of subsequent analyses of moderator variables.
We have also taken the opportunity to compare the performance of several new randomeffects variance estimators with previous procedures. And, at the same time, we have made available an R function that will allow metaanalysts to obtain out of their data the range of \({\tau }^{2}\) values computed from the 45 estimators analyzed in this work, as well as to assess how the pooled effect, its confidence interval, and its prediction interval vary according to the estimator chosen. The underlying idea is, in words of Kromrey and Hogarty [42]: “[…] to exercise caution in the interpretation of the results obtained from randomeffects models” and, also, “highlight the need for the development of metaanalytic methods that are robust to violations of these assumptions”.
Availability of data and materials
The datasets generated and analyzed during the current study are available in the Open Science Framework repository, https://osf.io/bv4au/?view_only=ec3ac26dad1d45efa9a65dd3cb88cdb5.33
Change history
03 March 2023
The paper was amended to correct the funding section.
Abbreviations
 CA:

Cochran heterogeneity estimator
 MP:

MandelPaule heterogeneity estimator
 DL:

DerSimonianLaird heterogeneity estimator
 HM:

HartungMakambi heterogeneity estimator
 CA2:

Twostep Cochran heterogeneity estimator
 DL2:

Twostep DerSimonianLaird heterogeneity estimator
 DLp:

Positive DerSimonianLaird heterogeneity estimator
 LCHr:

LinChuHodges r heterogeneity estimator
 LCHm:

LinChuHodges m heterogeneity estimator
 DLm:

Multistep DerSimonianLaird heterogeneity estimator
 MPM:

medianunbiased MandelPaule heterogeneity estimator
 GENQM:

medianunbiased generalized Q heterogeneity estimator
 ML:

Maximum likelihood heterogeneity estimator
 REML:

Restricted maximum likelihood heterogeneity estimator
 SJ:

SidikJonkman heterogeneity estimator
 SJ(CA):

SidikJonkman heterogeneity estimator based on a prior CA estimation
 FB:

Fully Bayesian heterogeneity estimators
 RB:

Rukhin Bayes heterogeneity estimator
 RBp:

Positive Rukhin Bayes heterogeneity estimator
 BM:

Bayes Modal heterogeneity estimator
 DLb:

Nonparametric bootstrap DerSimonianLaird heterogeneity estimator
 MBH:

MalzahnBöhningHolling heterogeneity estimator
 HSiv:

HunterSchmidt heterogeneity estimator weighted by inversed variance
 HSss:

HunterSchmidt heterogeneity estimator weighted by sample size
 HSk:

HunterSchmidt heterogeneity estimator corrected by small sample size
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Funding
Grant PID2019104080GBI00 funded by MCIN/AEI/ 10.13039/501100011033. The funding agency was not involved in the design of the study or in the analysis or interpretation of the data.
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D.B.R. and J.S.M. conducted a literature search on studies comparing estimators of the heterogeneity parameter in metaanalyses. J.S.M. and J.B. performed a literature search on the lack of normality in metaanalysis. D.B.R. and M.S. programmed the estimators not available in any R package and developed the codes for simulation and analysis of the results. D.B.R. generated the code for the figures and was a major contributor in writing the manuscript. All authors read and approved the final manuscript.
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Supplementary Information
Additional file 1.
Absolute bias of the frequentist estimators as a function of the number of primary studies.
Additional file 2.
Absolute bias of the frequentist estimators as a function of the average sample size of primary studies.
Additional file 3.
Absolute bias of the Bayesian estimators as a function of the number of primary studies.
Additional file 4.
Absolute bias of the Bayesian estimators as a function of the average sample size of primary studies.
Additional file 5.
Variance of the frequentist estimators as a function of the number of primary studies.
Additional file 6.
Variance of the Bayesian estimators as a function of the number of primary studies.
Additional file 7.
Variance of the frequentist estimators as a function of the average sample size of primary studies.
Additional file 8.
Variance of the Bayesian estimators as a function of the average sample size of primary studies.
Additional file 9.
Mean squared error of the frequentist estimators.
Additional file 10.
Mean squared error of the Bayesian estimators.
Additional file 11.
Absolute bias for the CA, DL and ML estimators according to some simulation conditions set for the study of Kromrey & Hogarty.
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BlázquezRincón, D., SánchezMeca, J., Botella, J. et al. Heterogeneity estimation in metaanalysis of standardized mean differences when the distribution of random effects departs from normal: A Monte Carlo simulation study. BMC Med Res Methodol 23, 19 (2023). https://doi.org/10.1186/s12874022018090
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DOI: https://doi.org/10.1186/s12874022018090